DRX411731
Illumina NovaSeq 6000 paired end sequencing of SAMD00567565

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DOT1L

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
293Tpa-fanChIP-DOT1L
age
Embryo
biomaterial_provider
Akihiko Yokoyama
cell_line
HEK293T(parent)
isolate
not applicable
sex
female
tissue
kidney
collection_date
missing
geo_loc_name
missing

Sequenced DNA Library

library_name
293Tpa-fanChIP-DOT1L
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq ChIP Library Preparation Kit(Illumina, Inc.)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
54216955
Reads aligned (%)
87.2
Duplicates removed (%)
49.5
Number of peaks
1705 (qval < 1E-05)

hg19

Number of total reads
54216955
Reads aligned (%)
86.5
Duplicates removed (%)
50.1
Number of peaks
1093 (qval < 1E-05)

Base call quality data from DBCLS SRA